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BEL Manager will provide a platform to manage BEL Statements and their annotations (BEL Evidences) along with a BEL Editor for creating and editing BEL Evidences.

Initial Wireframes

Supporting API

Pages

Features

Features needed to replace proprietary BEL KB Mgmt tools.

Stages:

  1. Required to retire Prod05
  2. Longer term features
  • OpenBEL Editor
    • Smart editor that can provide autosuggest and autocomplete support for building BEL Evidences (statements and annotations) Stage #1
    • Syntax checking/validation #1
    • Semantic checks/validation (best to come up with a standard protocol for implementing validation checks)  #2
    • 'Bulk' entry capability #2  (need recommendations on best way to support this - is this for gene expression spreadsheet entries?)
      • support entry of statements where source and relationship (and annotations) are same, but a list of targets (generally of the same BEL function type)
  • KB Mgmt
    • Allow storage of BEL Evidences #1
    • Add metadata to BEL Evidences #1
      • Source of BEL Evidence (e.g. Selventa, PMI, CTD http://ctdbase.org, etc)
      • Submitter
      • SubmitterDate
      • Reviewer
      • ReviewerDate
      • Review status
    • Allow searching of BEL Evidences by: #1
      • Citation (e.g. Pubmed ID) #1
      • Review status #1
      • BEL entities (with synonym expansion - e.g. p(HGNC:EGFR) would be expanded to all synonyms of EGFR #2
      • BEL functions #2
      • Annotations #?
      • Source of BEL Evidence (e.g. Selventa, PMI, CTD http://ctdbase.org, etc) #2
      • Submitter #2
      • SubmitterDate #2
      • Reviewer #2
      • ReviewerDate #2
  • Export BEL Evidences based on KB Search #2
  • Export BEL Script or XBEL for knowledge build process #1
    • This can be a precanned/hard-coded export procedure not tied to the user interface
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